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YearTypeTitleCitation
2018PublicationMaize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasetsNaser AlKhalifah†, Darwin A. Campbell†, Celeste M. Falcon†, Jack M. Gardiner†, Nathan D. Miller†, Maria Cinta Romay†, Ramona Walls†, Renee Walton†, Cheng-Ting Yeh†, Martin Bohn, Jessica Bubert, Edward S. Buckler, Ignacio Ciampitti, Sherry Flint-Garcia, Michael A. Gore, Christopher Graham, Candice Hirsch, James B. Holland, David Hooker, Shawn Kaeppler, Joseph Knoll, Nick Lauter, Elizabeth C. Lee, Aaron Lorenz, Jonathan P. Lynch, Stephen P. Moose, Seth C. Murray, Rebecca Nelson, Torbert Rocheford, Oscar Rodriguez, James C. Schnable, Brian Scully, Margaret Smith, Nathan Springer, Peter Thomison, Mitchell Tuinstra, Randall J. Wisser, Wenwei Xu, David Ertl, Patrick S. Schnable, Natalia De Leon, Edgar P. Spalding, Jode Edwards and Carolyn J. Lawrence-Dill
†Contributed equally

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2018PublicationActivities and specificities of CRISPR‐Cas9 and Cas12a nucleases for targeted mutagenesis in maizeKeunsub Lee, Yingxiao Zhang, Benjamin P Kleinstiver, Jimmy A Guo, Martin J Aryee, Jonah Miller, Aimee Malzahn, Scott Zarecor, Carolyn J Lawrence‐Dill, J Keith Joung, Yiping Qi, Kan Wang

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2018PublicationTransdisciplinary Graduate Training in Predictive Plant PhenomicsCarolyn J Lawrence-Dill, Theodore J Heindel, Patrick S Schnable, Stephanie J Strong, Jill Wittrock, Mary E Losch, Julie A Dickerson

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2018PublicationMaize GO Annotation—Methods, Evaluation, and Review (maize‐GAMER)Kokulapalan Wimalanathan, Iddo Friedberg, Carson M Andorf, Carolyn J Lawrence‐Dill

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2018PublicationSowing the seeds of skepticism: Russian state news and anti-GMO sentimentShawn F. Dorius, Carolyn J. Lawrence-Dill

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2018PublicationSowing the seeds of skepticism: Russian state news and the anti-GMO movement
Shawn F. Dorius, Carolyn J. Lawrence-Dill

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2018PublicationResponse to Persistent ER Stress in Plants: a Multiphasic Process that Transitions Cells from Prosurvival Activities to Cell DeathRenu Srivastava, Zhaoxia Li, Giulia Russo, Jie Tang, Ran Bi, Usha Muppirala, Sivanandan Chudalayandi, Andrew Severin, Mingze He, Samuel I Vaitkevicius, Carolyn J Lawrence-Dill, Peng Liu, Ann E Stapleton, Diane C Bassham, Federica Brandizzi, Stephen H Howell

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2018ReportDevelopment of the Enviratron FacilitySteven Whitham, Stephen Howell, Carolyn Lawrence-Dill, Thomas Lubberstedt, Lie Tang

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2018Pre-PrintCrowdsourcing Image Analysis for Plant Phenomics to Generate Ground Truth Data for Machine LearningZachary D Siegel, Naihui Zhou, Scott Zarecor, Nigel Lee, Darwin A Campbell, Carson M Andorf, Dan Nettleton, Carolyn J Lawrence-Dill, Baskar Ganapathysubramanian, Iddo Friedberg, Jonathan W Kelly

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2017PublicationThe effect of artificial selection on phenotypic plasticity in maizeJoseph L Gage, Diego Jarquin, Cinta Romay, Aaron Lorenz, Edward S Buckler, Shawn Kaeppler, Naser Alkhalifah, Martin Bohn, Darwin A Campbell, Jode Edwards, David Ertl, Sherry Flint-Garcia, Jack Gardiner, Byron Good, Candice N Hirsch, Jim Holland, David C Hooker, Joseph Knoll, Judith Kolkman, Greg Kruger, Nick Lauter, Carolyn J Lawrence-Dill, Elizabeth Lee, Jonathan Lynch, Seth C Murray, Rebecca Nelson, Jane Petzoldt, Torbert Rocheford, James Schnable, Patrick S Schnable, Brian Scully, Margaret Smith, Nathan M Springer, Srikant Srinivasan, Renee Walton, Teclemariam Weldekidan, Randall J Wisser, Wenwei Xu, Jianming Yu, Natalia Leon

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2017White PaperOpen Access to Digital Sequence Information Benefits the Three Objectives of the Convention on Biological DiversityR. Bastow, R. Bruskiewich, C. Lawrence-Dill, S. Dorius, Kersey, E. P. Marden, N. Patron, R. Sackville Hamilton, N. Warthmann

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2017PublicationA hypothesis-driven approach to assessing significance of differences in RNA expression levels among specific groups of genesMingze He, Peng Liu, Carolyn J Lawrence-Dill

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2017PublicationBoard# 78: Training Students with T-shaped Interdisciplinary Studies in Predictive Plant PhenomicsJulie A Dickerson, Theodore J Heindel, Carolyn J Lawrence-Dill, Patrick S Schnable, Jill Wittrock, Mary E Losch

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2017PublicationAn Interdisciplinary Graduate Course for Engineers, Plant Scientists, and Data Scientists in the Area of Predictive Plant PhenomicsTheodore J. Heindel, Carolyn J. Lawrence-Dill, Julie A. Dickerson, Patrick S. Schnable

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2017DatasetPhenotypic, genotypic, and environment data for the 2015 field season from the Genomes to Fields G x E projectDarwin Campbell, Natalia de Leon, Jode Edwards, Jack Gardiner, Naser AlKhalifah, Carolyn Lawrence-Dill, Jane Petzoldt, Cinta Romay, Renee Walton, and the Genomes to Fields Cooperators
The Genomes To Fields (G2F) Initiative
doi: 10.7946/P24S31

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2017Pre-printA method to assess significant differences in RNA expression among specific gene groupsMingze He, Peng Liu, and Carolyn J. Lawrence-Dill
doi: 10.1101/136143

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2016PublicationThe quest for understanding phenotypic variation via integrated approaches in the field environment.Pauli, D, Chapman S, Bart R, Topp C, Lawrence-Dill C, Poland J, Gore M.
Plant Physiology. 2016/8/1

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2016PublicationMaizeGDB: The Maize Genetics and Genomics Database.Harper L, Gardiner J, Andorf C, Lawrence CJ.
Methods Mol Biol. 2016;1374:187-202.
doi: 10.1007/978-1-4939-3167-5_9

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2016PublicationA Quick Guide to CRISPR sgRNA Design Tools.Brazelton VA Jr, Zarecor S, Wright DA, Wang Y, Liu J, Chen K, Yang B, Lawrence-Dill CJ

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2016White PaperHigh-throughput Plant Phenotyping and Data Analysis:
A report of a series of workshops and discussions
Anne Francois Adam-Blondon, Adedotun Akintayo, Carson Andorf, Elizabeth Arnaud, Darshi Banan, Ivan Baxter, Ed Buckler, Darwin Campbell, Steven Cannon, April Agee Carroll, Jackson Cothren, Robert Davey, Abdalla Dao, John Doonan, Shawn Dorius, Kate Dreher, David Ertl, Noah Fahlgren, Richard Finkers, Maren Freisen, Baskar Ganapathysubramanian, Georgios Gkoutos, Fiona Goggin, Michael Gore, Sharon Gray, Mingze He, Pankaj Jaiswal, Toni Kazic, Paul Kersey, Pierre Larmande, Andrew Leakey, David LeBauer, Xianran Li, Kara Lind, Argelia Lorence, Helene Lucas, David Marshall, John McKay, Richard Michelmore, Seth Murray, Pascal Neveu, Henry Nguyen, Trevor Nolan, Jesse Poland, Cyril Pommier, Yumou Qiu, Vishnu Ramasubramani, Chris Rawlings, Jean-Jack Riethoven, Elena Rice, Sindhu Sankaran, Patrick Schnable, Oskar Siemianowski, A.K. Singh, Uli Schurr, Mark Sorrells, Josh Stein, David
Stern, Yiwei Sun, Christopher Topp, Bjorn Usadel, Harkamal Walia, Ramona Walls, Xu Wang, Doreen Ware, Xiaoqing Yu, and Jianfeng Zhou

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2016PublicationAchieving plant CRISPR targeting that limits off-target effectsWolt J; Wang K; Sashital D; Lawrence-Dill C.
The Plant Genome. August 23, 2016.
doi: 10.3835/plantgenome2016.05.0047

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2016DatasetPhenotypic, genotypic, and environment data for the 2014 field season from the Genomes to Fields G x E projectDarwin Campbell, Natalia de Leon, Jode Edwards, Jack Gardiner, Naser AlKhalifah, Carolyn Lawrence-Dill, Jane Petzoldt, Cinta Romay, Renee Walton, and the Genomes to Fields Cooperators
The Genomes To Fields (G2F) Initiative
doi: 10.7946/P2V888

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2016PublicationMaizeGDB update: new tools, data and interface for the maize model organism database.Andorf CM, Cannon EK, Portwood JL nd, Gardiner JM, Harper LC, Schaeffer ML, Braun BL, Campbell DA, Vinnakota AG, Sribalusu VV, Huerta M, Cho KT, Wimalanathan K, Richter JD, Mauch ED, Rao BS, Birkett SM, Sen TZ, Lawrence-Dill CJ.
Nucleic Acids Res. 2016 Jan 4;44(D1):D1195-201.
doi: 10.1093/nar/gkv1007. Epub 2015 Oct 1

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2015PublicationEmerging semantics to link phenotype and environment.Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, Walls RL, White JW, Zhang G, Deans AR, Huala E, Lewis SE, Mabee PM.
PeerJ. 2015 Dec 14;3:e1470.
doi: 10.7717/peerj.1470. eCollection 2015

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2015PublicationAutomated update, revision and quality control of the Zea mays genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genesMeiYee Law, Kevin L. Childs, Michael S. Campbell, Joshua C. Stein, Andrew J. Olson, Carson Holt, Nicholas Panchy, Jikai Lei, Dian Jiao, Carson M. Andorf, Carolyn J. Lawrence, Doreen Ware, Shin-Han Shiu, Yanni Sun, Ning Jiang, Mark Yandell. Plant Physiology, January 2015; 167(1):25-39.
doi: 10.1104/pp.114.245027

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2015PublicationAn Ontology Approach to Comparative Phenomics in PlantsAnika Oellrich, Ramona L. Walls, Ethalinda K.S. Cannon, Steven B. Cannon, Laurel Cooper, Jack Gardiner, Georgios V. Gkoutos, Lisa Harper, Mingze He, Robert Hoehndorf, Pankaj Jaiswal, Scott Kalberer, John P. Lloyd, David Meinke, Naama Menda, Laura Moore, Rex Nelson, Anuradha Pujar, Carolyn J. Lawrence and Eva Huala
Plant Methods. 2015 Feb 25;11:10.
doi: 10.1186/s13007-015-0053-y. eCollection 2015.

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2015PublicationFinding our way through phenotypesAndrew R Deans, Suzanna E Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csősz, Hong Cui, Wasila Dahdul, Sandip Das, T. Alexander Dececchi, Agnes Dettai, Rui Diogo, Robert E. Druzinsky, Michel Dumontier, Nico M. Franz, Frank Friedrich, George V. Gkoutos, Melissa Haendel, Luke J. Harmon and others..
doi: 10.1371/journal.pbio.1002033

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2014PublicationG-Quadruplex (G4) Motifs in the Maize (Zea mays L.) Genome Are Enriched at Specific Locations in Thousands of Genes Coupled to Energy Status, Hypoxia, Low Sugar, and Nutrient DeprivationCarson M. Andorf, Mykhailo Kopylovc, Drena Dobbs, Karen E. Koch, M.Elizabeth Stroupec, Carolyn J. Lawrence Hank W. Bass. Journal of Genetics and Genomics, November 4, 2014
doi: 10.1016/j.jgg.2014.10.004

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2014PublicationMAKER-P: a tool-kit for the rapid creation, management, and quality control of plant genome annotations.Campbell M, Law M, Holt C, Stein J, Moghe G, Hufnagel D, Lei J, Achawanantakun R, Jiao D, Lawrence C, Ware D, Shiu SH, Childs K, Sun Y, Jiang N, Yandell M.; Feb 2014; 164(2): 513–524
doi: 10.1104/pp.113.230144

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2014PublicationDatabases (Book Chapter)Schaeffer, Mary L, Sen TZ and Lawrence C. 2014. Databases. IN: Genetics, Genomics and Breeding of Maize, Martin Bohn, Jinsheng Lai,Ramakrishna Wusirika (eds), pp 215-235 CRC Press, Boca Raton, FL. Aug 5 2014.

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2013PublicationMaize Metabolic Network Construction and Transcriptome AnalysisMarcela K. Monaco, Taner Z. Sen, Palitha D. Dharmawardhana, Liya Ren, Mary Schaeffer, Sushma Naithani, Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence, Doreen Ware and Pankaj Jaiswal; BMC Syst Biol. 2014; 8(1): 115.
doi: 10.3835/plantgenome2012.09.0025

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@ Pubmed
2013PublicationMaize chromosomal knobs are located in gene-dense areas and suppress local recombination.Ghaffari R, Cannon EK, Kanizay LB, Lawrence CJ, Dawe RK.; Chromosoma. 2013 Mar;122(1-2):67-75.
doi: 10.1007/s00412-012-0391-8. Epub 2012 Dec 9.

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2012PublicationRCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.Robbins RJ, Amaral-Zettler L, Bik H, Blum S, Edwards J, Field D, Garrity G, Gilbert JA, Kottmann R, Krishtalka L, Lapp H, Lawrence C, Morrison N, Tuama EÓ, Parr C, San Gil I, Schindel D, Schriml L, Vieglas D, Wooley J.; Stand Genomic Sci. 2012 Oct 10;7(1):159-65. doi: 10.4056/sigs.3156511. Epub 2012 Jul 28.

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2011PublicationMulti-source and ontology-based retrieval engine for maize mutant phenotypesGreen, J.M.; Harnsomburana, J.; Schaeffer, M.L.; Lawrence, C.J.; Shyu, C.R.; Database (2011) 2011 : bar012 doi: 10.1093/database/bar012

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2011PublicationThe MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via videoHarper, L.C.; Schaeffer, M.L.; Thistle, J.; Gardiner, J.M.; Andorf, C.M.; Campbell, D.A.; Cannon, E.K.S.; Braun, B.L.; Birkett, S.M.; Lawrence, C.J.; Database (2011) 2011 : bar016 doi: 10.1093/database/bar016

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2011PublicationMaizeGDB: curation and outreach go hand-in-handSchaeffer, M.L.; Harper, L.C.; Gardiner, J.M.; Andorf, C.M.; Campbell, D.A.; Cannon, E.K.S.; Sen, T.Z.; Lawrence, C.J.; Database (2011) doi: 10.1093/database/bar022

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2011PublicationPOPcorn: an online resource providing access to distributed and diverse maize project dataCannon EKS, Birkett SM, Braun BL, Kodavali S, Jennewein DM, Yilmaz A, Antonescu V, Antonescu C, Harper LC, Gardiner JM, Schaeffer ML, Campbell DA, Andorf CM, Andorf D, Lisch D, Koch KE, McCarty DR, Quackenbush J, Grotewold E, Lushbough CM, Sen TZ, Lawrence CJ. (2011) International Journal of Plant Genomics 2011. doi: /10.1155/2011/923035

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2011PublicationMaizeGDB–Past, Present, and FutureLawrence, C.J.; Maydica (2011)

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2010PublicationChoosing a genome browser for a Model Organism Database: surveying the Maize community.Sen, TZ, Harper, LC, Schaeffer, ML, Andorf, CM, Seigfried, T., Campbell, DA, Lawrence, CJ (2010); Database 2010:baq007. doi: 10.1093/database/baq007

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2010PublicationThe Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic mapsAndorf, CM, Lawrence, CJ, Harper, LC, Schaeffer, ML, Campbell, DA, Sen, TZ. (2010); Bioinformatics. 2010 26: 434-436. doi: 10.1093/bioinformatics/btp556

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2009PublicationDatabases and Data MiningCarolyn J. Lawrence and Doreen Ware (2009) Handbook of Maize: Genetics and Genomics, S. Hake and J. Bennetzen (Editors) pp.659-672. Springer. Publication Date: March 4, 2009 | ISBN-10: 0387778624 | ISBN-13: 978-0387778624 | Edition: 2009

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2009PublicationHigh-throughput linkage analysis of Mutator insertion sites in maizeGibum Yi, Diane Luth, Timothy D. Goodman, Carolyn J. Lawrence, and Phillip W. Becraft (2009) Plant J. 58(5):883-92. doi: 10.1111/j.1365-313X.2009.03821.x.

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2009PublicationA recommendation for naming transcription factor proteins in the grassesJohn Gray, Michael Bevan, Thomas Brutnell, C. Robin Buell, Karen Cone, Sarah Hake, David Jackson, Elizabeth Kellogg, Carolyn Lawrence, Susan McCouch, Todd Mockler, Stephen Moose, Andrew Paterson, Thomas Peterson, Daniel Rokhsar, Glaucia Mendes Souza, Nathan Springer, Nils Stein, Marja Timmermans, Guo-Liang Wang and Erich Grotewold Plant Physiology (2009) 149(1):4-6. doi: 10.1104/pp.108.128504

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2009PublicationMaizeGDB becomes 'sequence-centric'Sen, TZ, Andorf, CM, Schaeffer, ML, Harper, LC, Sparks, ME, Duvick, J, Brendel, VP, Cannon, E, Campbell, DA, Lawrence, CJ. (2009) Database. 2009:Vol. 2009:bap020. doi: 10.1093/database/bap020.

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2008PublicationPlantGDB: a resource for comparative plant genomicsJon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, and Volker Brendel (2008) Nucleic Acids Research 36(Database issue):D959-965

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2008PublicationMaizeGDB: the Maize Model Organism Database for Basic, Translational, and Applied ResearchCarolyn J. Lawrence, Lisa C. Harper, Mary L. Schaeffer, Taner Z. Sen, Trent E. Seigfried, and Darwin A. Campbell (2008) International Journal of Plant Genomics 2008;2008:496957. doi: 10.1155/2008/496957.

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2008PublicationBioExtract Server - an integrated workflow-enabling system to access and analyze heterogeneous, distributed biomolecular dataCarol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Doug Jennewein, and Brendel, V. (2008); IEEE Transactions Comp. Biol. Bioinformatics. doi: 10.1109/TCBB.2008.98

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2008PublicationImplementing bioinformatic workflows within the bioextract server.Lushbough CM, Bergman MK, Lawrence CJ, Jennewein D, Brendel V.; Int J Comput Biol Drug Des. 2008;1(3):302-12

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2007PublicationTranslational Genomics for Bioenergy Production from Fuelstock Grasses: Maize as the Model SpeciesCarolyn J. Lawrence and Virginia Walbot (2007) The Plant Cell 19(7):2091-2094.

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2007PublicationMaizeGDB, the Maize Genetics and Genomics DatabaseCarolyn J. Lawrence (2007) Plant Bioinformatics, D. Edwards (Editor) for the series Methods in Molecular Biology Humana Press, Totowa, New Jersey, USA.

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2007PublicationMaizeGDB's New Data Types, Resources, and ActivitiesCarolyn J. Lawrence, Mary L. Schaeffer, Trent E. Seigfried, Darwin A. Campbell, and Lisa C. Harper (2007) Nucleic Acids Research 35:D895-D900.

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2006White Paper Save Our Data!Lincoln D. Stein, William D. Beavis, Damian D. Gessler, Eva Huala, Carolyn J. Lawrence, Doreen Main, Lukas A. Mueller, Sue Y. Rhee, and Daniel S. Rokhsar (2006) The Scientist 20(4):24-25.

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2006PublicationPredicting Chromosomal Locations of Genetically Mapped Loci in Maize Using the Morgan2McClintock TranslatorCarolyn J. Lawrence, Trent E. Seigfried, Hank W. Bass, and Lorinda K. Anderson (2006) Genetics 172:2007-2009.

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2005PublicationComparative Plant Genomics Resources at PlantGDBQunfeng Dong, Carolyn J. Lawrence, Shannon D. Schlueter, Matthew D. Wilkerson, Stefan Kurtz, Carol Lushbough, and Volker Brendel (2005) Plant Physiology 139(2):610-618.

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2005PublicationThe Maize Genetics and Genomics Database. The Community Resource for Access to Diverse Maize DataCarolyn J. Lawrence, Trent E. Seigfried, and Volker Brendel (2005) Plant Physiology 138(1):55-58.

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2004PublicationA Standardized Kinesin NomenclatureCarolyn J. Lawrence, R. Kelly Dawe, Karen R. Christie, Don W. Cleveland, Scott C. Dawson, Sharyn A. Endow, Lawrence S. B. Goldstein, Holly V. Goodson, Nobutaka Hirokawa, Jonathon Howard, Russell L. Malmberg, J. Richard McIntosh, Harukata Miki, Timothy J. Mitchison, Yasushi Okada, Anireddy S. N. Reddy, William M. Saxton, Manfred Schliwa, Jonathan M. Scholey, Ronald D. Vale, Claire E. Walczak, and Linda Wordeman (2004) The Journal of Cell Biology 167(1):19-22. doi: 10.1083/jcb.200408113

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2004PublicationLumberJack: A Heuristic Tool for Sequence Alignment Exploration and Phylogenetic InferenceCarolyn J. Lawrence, Christian M. Zmasek, R. Kelly Dawe, and Russell L. Malmberg (2004) Bioinformatics 20(12):1977-1979. doi: 10.1093/bioinformatics/bth180

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2004PublicationPGROP - A Gateway to Plant Genome Research 'Outreach' ProgramsSanford Baran, Carolyn J. Lawrence, and Volker Brendel (2004) Plant Physiology 134:889.

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2004PublicationMaizeGDB, the Community Database for Maize Genetics and GenomicsCarolyn J. Lawrence, Qunfeng Dong, Mary L. Polacco, Trent E. Seigfried, and Volker Brendel (2004) Nucleic Acids Research 32: D393-D397.

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2002PublicationMaximum Likelihood Methods Reveal Conservation of Function Among Closely Related Kinesin FamiliesCarolyn J. Lawrence, Russell L. Malmberg, Michael G. Muszynski, and R. Kelly Dawe (2002)Journal of Molecular Evolution 54(1):42-53.

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2001PublicationDyneins Have Run Their Course in Plant LineageCarolyn J. Lawrence, N. Ronald Morris, Richard B. Meagher, and R. Kelly Dawe (2001)Traffic 2:362-363

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2000PublicationEffects of Mild Night Chilling on Respiration of Expanding Cotton LeavesCarolyn J. Lawrence and A. Scott Holaday (2000) Plant Science 157(2):233-244

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