This tool takes as its input one or more FASTA format DNA sequences and locates within them the MuTIR sequences, Adapter sequences, and Insertion sequences, should they be present. It will report all fragments of size found within the bounds, in ascending order. It will highlight each component, and report the size of each fragment and each insertion sequence. Here is an example of possible input, and an explanation of the tool.

Search for fragments of size: to

Number of mismatches allowed in MuTIR and Adapter sequences:

Please enter your sequence here in FASTA format: