GOMAP Datasets Table

Publicly available GOMAP Datasets

These datasets generated by GOMAP are new high-coverage and reproducible functional annotation sets of protein coding genes based on Gene Ontology (GO) term assignments. Follow the DOI link for more information, access, and download. Check out the main project page (Home on the left) to find out more about how they were generated and how you can use the pipeline yourself.

SpeciesGermplasm/
Line
Assembly/
Annotation
Gene
Model
Coverage
Median
Ann./Gene
DOI
(link)
Rel
Glycine max (Soybean)Williams 82Joint Genome Institute (JGI) Glycine max genome assembly Wm82.a4.v1 (genotype Williams 82, assembly 4.0, gene model annotation 1.0)100%1110.25739/59ec-17192019
Oryza sativa (Rice)japonicaIRGSP 1.0100%910.25739/53g0-j8592019
Triticum aestivum (Wheat)Chinese SpringIWGSC’s RefSeq 1.1100%1010.25739/65kf-jz202019
Zea mays (Maize)Mo17Zm-Mo17-REFERENCE-CAU-1.0100%1010.25739/m634-cn582019
Zea mays (Maize)PH207Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0100%1010.25739/dm9s-aa152019
Zea mays (Maize)W22Zm-W22-REFERENCE-NRGENE-2.0 Zm00004b.1100%1010.25739/e4va-9f092019
Hordeum vulgare (Barley)IBSC_PGSB_r1100%1010.25739/zvgv-8e372019
Zea mays (Maize)B73RefGen_v3 5b+100%1110.7946/P2S62P2017
Zea mays (Maize)B73RefGen_V4 Zm00001d.2
100%1010.7946/P2M9252017
Arachis hypogaea (Peanut)TifrunnerArachis hypogaea assembly 1.0100%1010.25739/chab-0e358/2019
Medicago truncatula (Barrel Clover)R108_HM340R108: v1.0100%910.25739/2sqc-j1408/2019
Medicago truncatula (Barrel Clover)A17_HM341Mt4.0v2100%1010.25739/py38-yb088/2019
Phaseolus vulgaris (Common Bean)G19833DOE-JGI and USDA-NIFA Phaseolus vulgaris
annotation 2.0
100%1110.25739/1ywe-ew968/2019
Vigna unguiculata (Cowpea)IT97K-499-35JGI annotation v1.1100%1110.25739/cdx9-wr978/2019
Brachypodium distachyon (Stiff Brome)In process
Gossypium herbaceum (Cotton)In process
Pinus lambertiana
(Pine)
In process
Sorghum bicolor (Sorghum)In process