Publicly available GOMAP Datasets
These datasets generated by GOMAP are new high-coverage and reproducible functional annotation sets of protein coding genes based on Gene Ontology (GO) term assignments. Follow the DOI link for more information, access, and download. Check out the main project page (Home on the left) to find out more about how they were generated and how you can use the pipeline yourself.
| Rel | Species | Germplasm/ Line | Assembly/ Annotation | DOI (link) | Data Wrangler |
|---|---|---|---|---|---|
| 2021 | Solanum pennellii (Tomato) | Solanum pennellii | Bolger2014.v1 | 10.25739/fhr4-cx67 | Dennis Psaroudakis |
| 2021 | Solanum lycopersicum (Tomato) | Heinz 1706 | ITAG4.1 | 10.25739/zh2v-4p15 | Dennis Psaroudakis |
| 2021 | Musa acuminata (Banana) | DH-Pahang | NCBI ASM31385v2 | 10.25739/yt7w-gs55 | Leila Fattel |
| 2021 | Theobroma cacao (Cacao) | B97-61/B2 | NCBI Criollo_cocoa_genome_V2 | 10.25739/9qc0-n310 | Leila Fattel |
| 2021 | Vitis vinifera (Grape) | Pinot Noir PN40024 | Genoscope 2010 genome 12X | 10.25739/jtfk-q888 | Haley Dostalik |
| 2020 | Pinus lambertiana (Sugar Pine) | Sugar Pine | TreeGenesDB sugar pine assembly v1.5 | 10.25739/jvs4-xr88 | Colleen Yanarella |
| 2020 | Cannabis sativa (Cannabis) | Hemp | NCBI Cannabis sativa GCA_900626175.1 | 10.25739/ab9z-2z86 | Kevin Chiteri |
| 2020 | Gossypium raimondii (Cotton) | Cotton D | Gossypium raimondii JGI v2.1 | 10.25739/a13t-zh47 | Parnal Joshi |
| 2019 | Glycine max (Soybean) | Williams 82 | Joint Genome Institute (JGI) Glycine max genome assembly Wm82.a4.v1 (genotype Williams 82, assembly 4.0, gene model annotation 1.0) | 10.25739/59ec-1719 | Dennis Psaroudakis |
| 2019 | Oryza sativa (Rice) | japonica | IRGSP 1.0 | 10.25739/53g0-j859 | Ha Vu |
| 2019 | Triticum aestivum (Wheat) | Chinese Spring | IWGSC's RefSeq 1.1 | 10.25739/65kf-jz20 | Dennis Psaroudakis |
| 2019 | Zea mays (Maize) | Mo17 | Zm-Mo17-REFERENCE-CAU-1.0 | 10.25739/m634-cn58 | Kokulapalan Wimalanathan |
| 2019 | Zea mays (Maize) | PH207 | Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0 | 10.25739/dm9s-aa15 | Kokulapalan Wimalanathan |
| 2019 | Zea mays (Maize) | W22 | Zm-W22-REFERENCE-NRGENE-2.0 Zm00004b.1 | 10.25739/e4va-9f09 | Kokulapalan Wimalanathan |
| 2019 | Hordeum vulgare (Barley) | IBSC_PGSB_r1 | 10.25739/zvgv-8e37 | Colleen Yanarella | |
| 2019 | Brachypodium distachyon (Stiff Brome) | Bd21 | Bd21.v3.1.r1 | 10.25739/dw2t-3g82 | Kokulapalan Wimalanathan |
| 2019 | Sorghum bicolor (Sorghum) | BTx623 | BTx623.v3.0.1.r1 | 10.25739/4ty0-ye98 | Kokulapalan Wimalanathan |
| 2019 | Arachis hypogaea (Peanut) | Tifrunner | Arachis hypogaea assembly 1.0 | 10.25739/chab-0e35 | Dennis Psaroudakis |
| 2019 | Medicago truncatula (Barrel Clover) | R108_HM340 | R108: v1.0 | 10.25739/2sqc-j140 | Dennis Psaroudakis |
| 2019 | Medicago truncatula (Barrel Clover) | A17_HM341 | Mt4.0v2 | 10.25739/py38-yb08 | Dennis Psaroudakis |
| 2019 | Phaseolus vulgaris (Common Bean) | G19833 | DOE-JGI and USDA-NIFA Phaseolus vulgaris annotation 2.0 | 10.25739/1ywe-ew96 | Dennis Psaroudakis |
| 2019 | Vigna unguiculata (Cowpea) | IT97K-499-35 | JGI annotation v1.1 | 10.25739/cdx9-wr97 | Dennis Psaroudakis |
| 2017 | Zea mays (Maize) | B73 | RefGen_v3 5b+ | 10.7946/P2S62P | Kokulapalan Wimalanathan |
| 2017 | Zea mays (Maize) | B73 | RefGen_V4 Zm00001d.2 | 10.7946/P2M925 | Kokulapalan Wimalanathan |
