Publicly available GOMAP Datasets
These datasets generated by GOMAP are new high-coverage and reproducible functional annotation sets of protein coding genes based on Gene Ontology (GO) term assignments. Follow the DOI link for more information, access, and download. Check out the main project page (Home on the left) to find out more about how they were generated and how you can use the pipeline yourself.
| Species | Germplasm/ Line | Assembly/ Annotation | Gene Model Coverage | Median Ann./Gene | DOI (link) | Rel |
|---|---|---|---|---|---|---|
| Pinus lambertiana (Sugar Pine) | Sugar Pine | TreeGenesDB sugar pine assembly v1.5 | 100% | 10 | 10.25739/jvs4-xr88 | 2020 |
| Cannabis sativa (Cannabis) | Hemp | NCBI Cannabis sativa GCA_900626175.1 | 100% | 11 | 10.25739/ab9z-2z86 | 2020 |
| Gossypium raimondii (Cotton) | Cotton D | Gossypium raimondii JGI v2.1 | 100% | 11 | 10.25739/a13t-zh47 | 2020 |
| Glycine max (Soybean) | Williams 82 | Joint Genome Institute (JGI) Glycine max genome assembly Wm82.a4.v1 (genotype Williams 82, assembly 4.0, gene model annotation 1.0) | 100% | 11 | 10.25739/59ec-1719 | 2019 |
| Oryza sativa (Rice) | japonica | IRGSP 1.0 | 100% | 9 | 10.25739/53g0-j859 | 2019 |
| Triticum aestivum (Wheat) | Chinese Spring | IWGSC’s RefSeq 1.1 | 100% | 10 | 10.25739/65kf-jz20 | 2019 |
| Zea mays (Maize) | Mo17 | Zm-Mo17-REFERENCE-CAU-1.0 | 100% | 10 | 10.25739/m634-cn58 | 2019 |
| Zea mays (Maize) | PH207 | Zm-PH207-REFERENCE_NS-UIUC_UMN-1.0 | 100% | 10 | 10.25739/dm9s-aa15 | 2019 |
| Zea mays (Maize) | W22 | Zm-W22-REFERENCE-NRGENE-2.0 Zm00004b.1 | 100% | 10 | 10.25739/e4va-9f09 | 2019 |
| Hordeum vulgare (Barley) | IBSC_PGSB_r1 | 100% | 10 | 10.25739/zvgv-8e37 | 2019 | |
| Zea mays (Maize) | B73 | RefGen_v3 5b+ | 100% | 11 | 10.7946/P2S62P | 2017 |
| Zea mays (Maize) | B73 | RefGen_V4 Zm00001d.2 | 100% | 10 | 10.7946/P2M925 | 2017 |
| Brachypodium distachyon (Stiff Brome) | Bd21 | Bd21.v3.1.r1 | 100% | 10 | 10.25739/dw2t-3g82 | 11/2019 |
| Sorghum bicolor (Sorghum) | BTx623 | BTx623.v3.0.1.r1 | 100% | 10 | 10.25739/4ty0-ye98 | 11/2019 |
| Arachis hypogaea (Peanut) | Tifrunner | Arachis hypogaea assembly 1.0 | 100% | 10 | 10.25739/chab-0e35 | 8/2019 |
| Medicago truncatula (Barrel Clover) | R108_HM340 | R108: v1.0 | 100% | 9 | 10.25739/2sqc-j140 | 8/2019 |
| Medicago truncatula (Barrel Clover) | A17_HM341 | Mt4.0v2 | 100% | 10 | 10.25739/py38-yb08 | 8/2019 |
| Phaseolus vulgaris (Common Bean) | G19833 | DOE-JGI and USDA-NIFA Phaseolus vulgaris annotation 2.0 | 100% | 11 | 10.25739/1ywe-ew96 | 8/2019 |
| Vigna unguiculata (Cowpea) | IT97K-499-35 | JGI annotation v1.1 | 100% | 11 | 10.25739/cdx9-wr97 | 8/2019 |
