GOMAP Datasets Table2

Publicly available GOMAP Datasets

These datasets generated by GOMAP are new high-coverage and reproducible functional annotation sets of protein coding genes based on Gene Ontology (GO) term assignments. Follow the DOI link for more information, access, and download. Check out the main project page (Home on the left) to find out more about how they were generated and how you can use the pipeline yourself.

RelSpeciesGermplasm/
Line
Assembly/
Annotation
DOI
(link)
Data Wrangler
2021Vaccinium corymbosum L.
(Highbush Blueberry)
DraperGigaDB V_corymbosum_v1.0 10.25739/q7rq-e992Leila Fattel
2021Brassica napus
(Canola)
ZS11BnPIR ZS11 genome 10.25739/xgmr-hr31Dollye Starr
2021Coffea canephora
(Coffee)
Coffea canephoraCGH C. canephora genome v1.0 10.25739/rm4j-3580Leila Fattel
2021Solanum pennellii
(Tomato)
Solanum pennellii Bolger2014.v110.25739/fhr4-cx67Dennis Psaroudakis
2021Solanum lycopersicum
(Tomato)
Heinz 1706ITAG4.110.25739/zh2v-4p15Dennis Psaroudakis
2021Musa acuminata
(Banana)
DH-PahangNCBI ASM31385v210.25739/yt7w-gs55Leila Fattel
2021Theobroma cacao
(Cacao)
B97-61/B2NCBI Criollo_cocoa_genome_V2 10.25739/9qc0-n310
Leila Fattel
2021Vitis vinifera
(Grape)
Pinot Noir
PN40024
Genoscope 2010 genome 12X10.25739/jtfk-q888Haley Dostalik
2020Pinus lambertiana
(Sugar Pine)
Sugar PineTreeGenesDB sugar pine assembly v1.510.25739/jvs4-xr88Colleen Yanarella
2020Cannabis sativa
(Cannabis)
HempNCBI Cannabis sativa GCA_900626175.110.25739/ab9z-2z86Kevin Chiteri
2020Gossypium raimondii
(Cotton)
Cotton DGossypium raimondii JGI v2.110.25739/a13t-zh47Parnal Joshi
2019Glycine max (Soybean)Williams 82Joint Genome Institute (JGI) Glycine max genome assembly Wm82.a4.v1 (genotype Williams 82, assembly 4.0, gene model annotation 1.0)10.25739/59ec-1719Dennis Psaroudakis
2019Oryza sativa (Rice)japonicaIRGSP 1.010.25739/53g0-j859Ha Vu
2019Triticum aestivum (Wheat)Chinese SpringIWGSC's RefSeq 1.110.25739/65kf-jz20Dennis Psaroudakis
2019Zea mays (Maize)Mo17Zm-Mo17-REFERENCE-CAU-1.010.25739/m634-cn58Kokulapalan Wimalanathan
2019Zea mays (Maize)PH207Zm-PH207-REFERENCE_NS-UIUC_UMN-1.010.25739/dm9s-aa15Kokulapalan Wimalanathan
2019Zea mays (Maize)W22Zm-W22-REFERENCE-NRGENE-2.0 Zm00004b.110.25739/e4va-9f09Kokulapalan Wimalanathan
2019Hordeum vulgare (Barley)IBSC_PGSB_r110.25739/zvgv-8e37Colleen Yanarella
2019Brachypodium distachyon (Stiff Brome)Bd21Bd21.v3.1.r110.25739/dw2t-3g82Kokulapalan Wimalanathan
2019Sorghum bicolor (Sorghum)BTx623BTx623.v3.0.1.r110.25739/4ty0-ye98Kokulapalan Wimalanathan
2019Arachis hypogaea (Peanut)TifrunnerArachis hypogaea assembly 1.010.25739/chab-0e35Dennis Psaroudakis
2019Medicago truncatula (Barrel Clover)R108_HM340R108: v1.010.25739/2sqc-j140Dennis Psaroudakis
2019Medicago truncatula (Barrel Clover)A17_HM341Mt4.0v210.25739/py38-yb08Dennis Psaroudakis
2019Phaseolus vulgaris (Common Bean)G19833DOE-JGI and USDA-NIFA Phaseolus vulgaris
annotation 2.0
10.25739/1ywe-ew96Dennis Psaroudakis
2019Vigna unguiculata (Cowpea)IT97K-499-35JGI annotation v1.110.25739/cdx9-wr97Dennis Psaroudakis
2017Zea mays (Maize)B73RefGen_v3 5b+10.7946/P2S62PKokulapalan Wimalanathan
2017Zea mays (Maize)B73RefGen_V4 Zm00001d.2
10.7946/P2M925Kokulapalan Wimalanathan